Basic Information
Locus ID:
nbisL1-mrna-14929
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
WRKY4
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000160F_pilon | 2557291 | 2560776 | + | nbisL1-mrna-14929 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 52,426.41 Da | 58.84 | 57.80 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 407 | 427 | 3.1E-6 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 234 | 290 | 1.1E-23 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 231 | 292 | 1.83E-24 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 398 | 427 | 9.29E-9 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 393 | 443 | 4.3E-14 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 218 | 293 | 4.4E-26 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 406 | 442 | 5.9E-5 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 233 | 291 | 6.7E-33 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 228 | 292 | 21.26424 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 401 | 471 | 15.330426 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03340.1 | WRKY DNA-binding protein 3. Encodes WRKY DNA-binding protein 3 (WRKY3). | 0 |
| RefSeq | XP_021651262.1 | probable WRKY transcription factor 3 isoform X1 [Hevea brasiliensis] | 0 |
| Q9ZQ70 | Probable WRKY transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=WRKY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9VWJ7 | WRKY transcription factor 3 OS=Manihot esculenta OX=3983 GN=MANES_05G106900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology