Basic Information
Locus ID:
nbisL1-mrna-14884
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000160F_pilon | 2207992 | 2211932 | + | nbisL1-mrna-14884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 85,074.57 Da | 47.23 | 83.61 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10557 | Cullin protein neddylation domain | 662 | 722 | 1.1E-24 | IPR019559 |
| Pfam | PF00888 | Cullin family | 29 | 630 | 2.8E-223 | IPR001373 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 643 | 732 | 4.44E-27 | IPR036390 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 22 | 372 | 1.41E-112 | IPR016159 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 368 | 640 | 1.01E-96 | IPR036317 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 373 | 484 | 2.6E-43 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 644 | 732 | 6.0E-32 | IPR036388 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 18 | 144 | 1.5E-45 | - |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 489 | 643 | 2.5E-53 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 145 | 264 | 1.9E-38 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 265 | 372 | 8.5E-35 | - |
| SMART | SM00884 | Cullin_Nedd8_2 | 659 | 726 | 1.1E-33 | IPR019559 |
| SMART | SM00182 | cul_2 | 404 | 550 | 4.0E-70 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 374 | 601 | 55.982849 | IPR016158 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 0 |
| RefSeq | XP_015576817.1 | cullin-3A [Ricinus communis] | 0 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MAK2 | CULLIN_2 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg5422, jg7103, jg9351 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3770 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014090 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19276, Sbi_jg43835 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18077 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015128 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl31723, Sgl36083, Sgl41391 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002634, gene:ENSEOMG00000012717 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0001390, CQ.Regalona.r1.6BG0001510 |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30081410, pistato.v30126250, pistato.v30194820 ... |
| Apiaceae | Apium graveolens | 2 | Ag4G00872, Ag6G00385 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007010, COCNU_13G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719999, gene-LOC103720217 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1701.V1.1, AsparagusV1_03.86.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G29312, Ftri17G18386, Ftri18G14506 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G26830.1, AT1G69670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006921m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g21950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g018850.2N, BniB04g039950.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0081, Ceq08G0254 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0072, Cgl08G0206 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g03190, gene.Cymno03g11700 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0147s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12140 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-1990, nbisL1-mrna-2227, nbisL1-mrna-5539 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.173, evm.TU.LG03.231 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027174, Pov_00027974 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13311 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3476, AH08.442, BH07.3296, BH08.450, CH07.3352 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0145610, gene-QOZ80_2BG0201050 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0205830.1, HORVU.MOREX.r3.6HG0615160.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_017245, gene-QYE76_024856, gene-QYE76_025333 ... |
| Poaceae | Oryza coarctata | 6 | Oco03G021570, Oco04G022200, Oco07G017240, Oco08G016610 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g51180.1, LOC_Os04g55030.1, LOC_Os08g07400.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G278300, gene-BS78_07G058900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203319, Pt_Chr0300820, Pt_Chr0402379 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr06G002290, Chr09G020130, Chr13G004360, Chr15G003620 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G886000, Tel6E01G549100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG072970, gene_TRIDC2BG079400 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G520700.1, TraesCS2B02G550000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb172040_P001, Zm00001eb254590_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21847, nbis-gene-8720 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g14422, Zma_g17138, Zma_g22542, Zma_g22543, Zma_g23679 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.262, evm.TU.LG12.1442, evm.TU.LG13.355 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g28620, gene.Posoc04g13550 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.640, evm.TU.Scaffold_17_RagTag.361 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22966, nbisL1-mrna-26822 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20687 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14884, nbisL1-mrna-15736 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.333, evm.TU.utg000013l.249 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002473, Maker00006655 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11330, nbisL1-mrna-7159 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15745, nbisL1-mrna-17855 |
| Salicaceae | Populus euphratica | 2 | populus_peu07339, populus_peu21335 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132623289, gene-LOC132626094, gene-LOC132626097 |
| Solanaceae | Solanum chilense | 2 | SOLCI001193500, SOLCI003301000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008063, gene-LOC107011441 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14063_chr05_+, STRG.29297_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3295, TC03G0606 |
| Zosteraceae | Zostera marina | 2 | Zosma01g04920.v3.1, Zosma06g17140.v3.1 |