Basic Information
Locus ID:
nbisL1-mrna-14858
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12671613 | 12683272 | - | nbisL1-mrna-14858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 95,282.35 Da | 43.85 | 89.56 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 490 | 688 | 3.32311E-131 | - |
| CDD | cd18787 | SF2_C_DEAD | 699 | 816 | 1.00332E-41 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 712 | 820 | 3.6E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 511 | 672 | 3.7E-40 | IPR011545 |
| Pfam | PF00400 | WD domain, G-beta repeat | 190 | 226 | 2.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 360 | 2.67E-36 | IPR036322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 555 | 840 | 5.94E-74 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 148 | 377 | 3.9E-27 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 478 | 694 | 5.5E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 695 | 859 | 1.1E-57 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 10 | 147 | 1.1E-8 | IPR015943 |
| SMART | SM00487 | ultradead3 | 505 | 702 | 1.2E-56 | IPR014001 |
| SMART | SM00320 | WD40_4 | 229 | 275 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 117 | 0.061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 184 | 49.0 | IPR001680 |
| SMART | SM00490 | helicmild6 | 739 | 820 | 3.0E-31 | IPR001650 |
| SMART | SM00320 | WD40_4 | 187 | 226 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 19 | 57 | 490.0 | IPR001680 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 486 | 514 | 9.86537 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 698 | 859 | 25.750874 | IPR001650 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 194 | 235 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 517 | 687 | 29.842838 | IPR014001 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 194 | 226 | 10.100143 | - |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 633 | 641 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_037493005.1 | eukaryotic initiation factor 4A-14 [Jatropha curcas] | 0 |
| Q40467 | Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P9ESY1 | eukaryotic initiation factor 4A-15-like OS=Juglans regia OX=51240 GN=LOC109009115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology