Basic Information
Locus ID:
nbisL1-mrna-14846
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 2604511 | 2606202 | + | nbisL1-mrna-14846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 51,713.27 Da | 40.45 | 97.64 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 293 | 410 | 1.41933E-41 | - |
| CDD | cd17939 | DEADc_EIF4A | 57 | 282 | 6.29044E-126 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 105 | 266 | 6.8E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 306 | 414 | 1.4E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 149 | 434 | 7.91E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 289 | 453 | 5.2E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 288 | 8.6E-61 | IPR027417 |
| SMART | SM00487 | ultradead3 | 99 | 296 | 3.8E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 333 | 414 | 1.3E-30 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 111 | 281 | 28.836855 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 292 | 453 | 25.02388 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 227 | 235 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_021610321.1 | eukaryotic initiation factor 4A-14 [Manihot esculenta] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L5H5 | Uncharacterized protein MANES_04G141500 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology