Basic Information
Locus ID:
nbisL1-mrna-14840
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000160F_pilon | 1864068 | 1868799 | + | nbisL1-mrna-14840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 60,221.08 Da | 56.74 | 79.19 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 20 | 163 | 1.6E-60 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 241 | 382 | 5.8E-74 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 245 | 386 | 7.72E-26 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 26 | 170 | 4.06E-20 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 19 | 164 | 5.4E-13 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 249 | 368 | 6.1E-18 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 442 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_034908891.1 | uncharacterized protein LOC118044611 [Populus alba] | 0 |
| TrEMBL | A0A2P2JPF7 | Uncharacterized protein LOC105116278 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology