Basic Information
Locus ID:
nbisL1-mrna-14840
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 270499 | 272532 | + | nbisL1-mrna-14840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 74,473.49 Da | 45.86 | 92.67 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 180 | 208 | 0.00229008 | IPR018392 |
| Pfam | PF01476 | LysM domain | 181 | 214 | 0.0017 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 403 | 641 | 3.0E-29 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 348 | 644 | 8.26E-53 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 171 | 236 | 2.4E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 340 | 430 | 4.4E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 431 | 665 | 3.3E-48 | - |
| SMART | SM00257 | LysM_2 | 180 | 228 | 0.0027 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 353 | 645 | 26.08219 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 179 | 227 | 9.762865 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01840.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_048230266.1 | protein LYK2 [Ricinus communis] | 0 |
| Q9SGI7 | Protein LYK2 OS=Arabidopsis thaliana OX=3702 GN=LYK2 PE=2 SV=1 | 0 | |
| TrEMBL | B9RBK6 | ATP binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1677900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19895, jg30425, jg40458 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5325 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029097 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166430 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1041, Sbi_jg35562, Sbi_jg35563 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3670 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027892 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22812, Sgl23733, Sgl27940, Sgl28929 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006781, gene:ENSEOMG00000037092 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0011090, CQ.Regalona.r1.7BG0013240 |
| Apiaceae | Apium graveolens | 1 | Ag4G00708 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G28993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G01840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g00220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g060270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0193 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0134 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10861, nbisL1-mrna-4440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.161 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041410 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15071 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.961, evm.TU.LG12.780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.41 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14840 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7967 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-39 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.12 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21514 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17551 |
| Salicaceae | Populus euphratica | 1 | populus_peu01218 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623667 |
| Solanaceae | Solanum chilense | 1 | SOLCI000006500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010461 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13581 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3495 |