Basic Information
Locus ID:
nbisL1-mrna-14832
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12477715 | 12481391 | - | nbisL1-mrna-14832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 83,579.94 Da | 46.26 | 81.86 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03354 | LbH_SAT | 163 | 263 | 1.15419E-55 | - |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 650 | 746 | 1.1E-31 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 473 | 520 | 7.2E-8 | IPR002885 |
| Pfam | PF00132 | Bacterial transferase hexapeptide (six repeats) | 216 | 249 | 9.0E-12 | IPR001451 |
| Pfam | PF06426 | Serine acetyltransferase, N-terminal | 32 | 136 | 4.4E-36 | IPR010493 |
| SUPERFAMILY | SSF51161 | Trimeric LpxA-like enzymes | 31 | 266 | 2.36E-64 | IPR011004 |
| Gene3D | G3DSA:1.10.3130.10 | serine acetyltransferase, domain 1 | 14 | 165 | 1.8E-55 | IPR042122 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 447 | 617 | 6.3E-29 | IPR011990 |
| Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 166 | 284 | 6.2E-38 | - |
| SMART | SM00971 | SATase_N_2_a | 32 | 136 | 1.9E-51 | IPR010493 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 476 | 509 | 3.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 449 | 474 | 3.0E-4 | IPR002885 |
| TIGRFAM | TIGR01172 | cysE: serine O-acetyltransferase | 106 | 265 | 3.9E-64 | IPR005881 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | 12.013642 | IPR002885 |
| ProSitePatterns | PS00101 | Hexapeptide-repeat containing-transferases signature. | 225 | 253 | - | IPR018357 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 367 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021672854.1 | pentatricopeptide repeat-containing protein At2g15690-like [Hevea brasiliensis] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J6HTI8 | serine O-acetyltransferase OS=Cannabis sativa OX=3483 GN=G4B88_013712 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology