Basic Information
Locus ID:
nbisL1-mrna-1480
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 6272874 | 6279970 | - | nbisL1-mrna-1480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 130,485.18 Da | 41.27 | 87.38 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 155 | 232 | 3.91271E-4 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 400 | 978 | 1.8E-177 | IPR007855 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 44 | 99 | 3.67E-5 | IPR011009 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 138 | 238 | 4.99E-7 | IPR035979 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 20 | 123 | 2.9E-7 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 143 | 228 | 8.7E-6 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 236 | 8.569372 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_021674490.1 | RNA-dependent RNA polymerase 2 [Hevea brasiliensis] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JZA0 | RNA-dependent RNA polymerase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology