Basic Information
Locus ID:
nbisL1-mrna-14783
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
EFTS
Description:
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12009430 | 12014775 | - | nbisL1-mrna-14783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 130,451.16 Da | 49.11 | 80.86 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14275 | UBA_EF-Ts | 760 | 796 | 6.57331E-17 | - |
| CDD | cd14275 | UBA_EF-Ts | 1001 | 1037 | 2.16862E-18 | - |
| Pfam | PF00889 | Elongation factor TS | 809 | 951 | 3.8E-30 | IPR014039 |
| Pfam | PF00889 | Elongation factor TS | 1049 | 1192 | 1.5E-28 | IPR014039 |
| Pfam | PF00575 | S1 RNA binding domain | 146 | 216 | 4.1E-16 | IPR003029 |
| Pfam | PF00575 | S1 RNA binding domain | 264 | 325 | 1.1E-8 | IPR003029 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 140 | 218 | 7.55E-22 | IPR012340 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 1051 | 1192 | 4.58E-43 | IPR036402 |
| SUPERFAMILY | SSF46934 | UBA-like | 756 | 809 | 2.6E-17 | IPR009060 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 255 | 341 | 1.51E-12 | IPR012340 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 810 | 951 | 3.66E-44 | IPR036402 |
| SUPERFAMILY | SSF46934 | UBA-like | 998 | 1049 | 3.35E-18 | IPR009060 |
| Gene3D | G3DSA:1.10.286.20 | - | 865 | 909 | 6.4E-49 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 137 | 221 | 1.2E-23 | - |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 813 | 950 | 6.4E-49 | IPR036402 |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 1054 | 1191 | 2.8E-46 | IPR036402 |
| Gene3D | G3DSA:1.10.286.20 | - | 1106 | 1150 | 2.8E-46 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 996 | 1050 | 1.8E-24 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 259 | 341 | 6.4E-15 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 755 | 808 | 7.8E-24 | - |
| SMART | SM00316 | S1_6 | 262 | 333 | 4.2E-14 | IPR022967 |
| SMART | SM00316 | S1_6 | 145 | 216 | 2.9E-23 | IPR022967 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 756 | 849 | 4.7E-33 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 997 | 1094 | 1.0E-35 | IPR001816 |
| TIGRFAM | TIGR00116 | tsf: translation elongation factor Ts | 844 | 968 | 2.3E-31 | IPR001816 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 147 | 216 | 21.461048 | IPR003029 |
| ProSiteProfiles | PS50126 | S1 domain profile. | 264 | 333 | 18.176252 | IPR003029 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 1006 | 1021 | - | IPR018101 |
| ProSitePatterns | PS01126 | Elongation factor Ts signature 1. | 765 | 780 | - | IPR018101 |
| ProSitePatterns | PS01127 | Elongation factor Ts signature 2. | 829 | 839 | - | IPR018101 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 756 | 968 | 40.714447 | IPR001816 |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 997 | 1203 | 35.754036 | IPR001816 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 127 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29060.1 | elongation factor Ts family protein. | 0 |
| RefSeq | XP_048227509.1 | polyprotein of EF-Ts, chloroplastic [Ricinus communis] | 0 |
| Q9SZD6 | Polyprotein of EF-Ts, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETs PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7XSY5 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_057276 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15501, jg33837 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014585 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25014, Sbi_jg8868 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007769, GOSA_00007770 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42256, Sgl47032 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009631, gene:ENSEOMG00000033644 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019800, CQ.Regalona.r1.8BG0022580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256850 |
| Apiaceae | Apium graveolens | 1 | Ag10G01520 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G007630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702876 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2252.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G02403, Ftri8G29592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024316m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27000.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g083910.2N, BniB05g007220.2N, BniB05g008470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0078s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g16210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003868 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29558, Lb6G30757 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3682, BH05.3703, CH05.3888 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393080, gene-QOZ80_5BG0441360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001962 |
| Poaceae | Oryza coarctata | 2 | Oco23G007930, Oco24G007530 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g35630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G089800, gene-BS78_K022400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703772 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016580, Chr19G009600, Chr27G006830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G182200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG015330, gene_TRIDC5BG016440 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G093200.1, TraesCS5B02G099300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb078330_P001, Zm00001eb091120_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30276 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25943 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2494, evm.TU.LG10.1532 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07330 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1927 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17578 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10199, nbisL1-mrna-21839, nbisL1-mrna-4696 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1099 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14783 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1210 |
| Salicaceae | Populus euphratica | 1 | populus_peu21951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603424 |
| Solanaceae | Solanum chilense | 1 | SOLCI006671800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025533 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11808, gene_9320 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1437 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02340.v3.1 |