Basic Information
Locus ID:
nbisL1-mrna-14782
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
DNA-directed 5'-3' RNA polymerase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12002002 | 12007695 | + | nbisL1-mrna-14782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 54,831.91 Da | 45.16 | 80.30 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 31 | 296 | 3.2E-85 | IPR033389 |
| Pfam | PF03871 | RNA polymerase Rpb5, N-terminal domain | 331 | 384 | 3.9E-11 | IPR005571 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 184 | 289 | 2.55E-19 | - |
| SUPERFAMILY | SSF53036 | Eukaryotic RPB5 N-terminal domain | 331 | 421 | 1.57E-19 | IPR036710 |
| Gene3D | G3DSA:3.10.20.90 | - | 183 | 301 | 3.6E-41 | - |
| Gene3D | G3DSA:3.40.1340.10 | - | 328 | 424 | 3.2E-20 | IPR036710 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 188 | 290 | 23.964085 | IPR000270 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_021598149.1 | auxin-responsive protein IAA27 [Manihot esculenta] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L4N6 | Auxin-responsive protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology