Basic Information
Locus ID:
nbisL1-mrna-14740
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 2001555 | 2004905 | - | nbisL1-mrna-14740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 36,109.55 Da | 48.84 | 89.38 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 69 | 120 | 1.57998E-19 | - |
| Pfam | PF12906 | RING-variant domain | 69 | 119 | 3.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 124 | 2.83E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 133 | 8.0E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 68 | 120 | 3.3E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 61 | 126 | 19.985966 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015898980.1 | uncharacterized protein LOC107432369 [Ziziphus jujuba var. spinosa] | 0 |
| TrEMBL | A0A6P4AR20 | uncharacterized protein LOC107432369 OS=Ziziphus jujuba OX=326968 GN=LOC107432369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology