Basic Information
Locus ID:
nbisL1-mrna-14738
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 22008610 | 22015254 | - | nbisL1-mrna-14738 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 90,535.41 Da | 47.45 | 84.89 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 25 | 332 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 39 | 330 | 1.0E-85 | IPR023801 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 548 | 764 | 2.24E-26 | IPR029063 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 20 | 376 | 1.92E-122 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 18 | 383 | 8.9E-134 | IPR037138 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 555 | 792 | 1.2E-25 | - |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 124 | 3.4E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 128 | 148 | 3.4E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 169 | 185 | 3.4E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 41 | 58 | 3.4E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 228 | 241 | 3.4E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 150 | 173 | 8.6E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 267 | 277 | 8.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 263 | 3.4E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 182 | 197 | 8.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 74 | 92 | 3.4E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 452 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021591917.1 | histone deacetylase 6 [Manihot esculenta] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498JM91 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology