halophFGD

Basic Information

Locus ID: nbisL1-mrna-14719

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: Ring finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000160F_pilon	1036034	1036453	+	nbisL1-mrna-14719

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.05	15,361.51 Da	49.05	83.53	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13639	Ring finger domain	92	136	2.4E-12	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	93	138	3.3E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	55	139	1.6E-16	IPR013083
SMART	SM00184	ring_2	94	135	1.5E-4	IPR001841
SMART	SM00744	ringv_2	93	136	1.3E-4	IPR011016
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	94	136	12.046688	IPR001841

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K16285 (RING/U-box domain-containing protein [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67856.1	RING/U-box superfamily protein.
RefSeq	XP_012085531.1	probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
TrEMBL	A0A061E8K8	RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	15	jg16999, jg21125, jg27472, jg34592, jg34886, jg34975, jg5223 ... jg37454, jg39472, jg5316, jg7288, jg9121, jg9204, jg9205, jg9518
Aizoaceae	Mesembryanthemum crystallinum	3	gene_18100, gene_18410, gene_4089
Amaranthaceae	Atriplex hortensis	2	Ah013726, Ah025508
Amaranthaceae	Beta vulgaris	2	BVRB_6g134240, BVRB_6g146750
Amaranthaceae	Suaeda glauca	5	Sgl33639, Sgl35203, Sgl35209, Sgl38950, Sgl40585
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000161, gene:ENSEOMG00000002754 ... gene:ENSEOMG00000025066, gene:ENSEOMG00000025142, gene:ENSEOMG00000027134
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0023390, CQ.Regalona.r1.6BG0004460 ... CQ.Regalona.r1.6BG0024770
Anacardiaceae	Pistacia vera	2	pistato.v30172620, pistato.v30197660
Apiaceae	Apium graveolens	13	Ag10G00112, Ag11G03218, Ag2G00078, Ag3G00195, Ag3G01509 ... Ag4G02755, Ag5G02112, Ag6G00532, Ag8G01829, Ag8G02060, Ag8G02061, Ag8G02237, AgUnG01432
Arecaceae	Cocos nucifera	7	COCNU_01G013650, COCNU_04G005630, COCNU_07G002720 ... COCNU_11G006030, COCNU_13G001070, scaffold001177G000010, scaffold003477G000040
Arecaceae	Phoenix dactylifera	9	gene-LOC103697166, gene-LOC103705822, gene-LOC103714698 ... gene-LOC103716787, gene-LOC103717573, gene-LOC103718356, gene-LOC103721136, gene-LOC103723160, gene-LOC120108765
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1071.V1.1, AsparagusV1_05.2188.V1.1 ... AsparagusV1_05.47.V1.1
Asteraceae	Flaveria trinervia	16	Ftri12G03409, Ftri14G14574, Ftri15G00968, Ftri17G07991 ... Ftri18G02377, Ftri18G20352, Ftri18G23904, Ftri1G00118, Ftri2G19754, Ftri3G03878, Ftri3G03940, Ftri4G26478, Ftri7G23954, Ftri8G11240, Ftri9G07195, FtriNA26102
Brassicaceae	Arabidopsis thaliana	6	AT1G15100.1, AT1G24580.1, AT1G67856.1, AT2G01150.1 ... AT2G04240.1, AT3G51325.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001158m.g.v1.0, Thhalv10002694m.g.v1.0 ... Thhalv10008995m.g.v1.0, Thhalv10009051m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g23210.v2.2, Sp2g10020.v2.2, Sp2g12620.v2.2 ... Sp3g23140.v2.2, Sp5g10900.v2.2
Brassicaceae	Brassica nigra	8	BniB01g034700.2N, BniB02g010260.2N, BniB02g064540.2N ... BniB04g009890.2N, BniB04g014880.2N, BniB04g064340.2N, BniB06g040410.2N, BniB08g065280.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G2240, Ceq06G0124, Ceq07G0499, Ceq07G0500, Ceq07G0501 ... Ceq07G0502
Casuarinaceae	Casuarina glauca	6	Cgl02G2330, Cgl06G1851, Cgl07G0522, Cgl07G0523, Cgl07G0524 ... Cgl07G0525
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g05940, gene.Cymno02g17810, gene.Cymno14g06250 ... gene.Cymno15g05870
Dunaliellaceae	Dunaliella salina	1	Dusal.0415s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g35340, gene.Thate06g07510, gene.Thate07g20970 ... gene.Thate08g20910, gene.Thate09g17490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10658, nbisL1-mrna-6439, nbisL1-mrna-6964 ... nbisL1-mrna-9798
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG02.2808, evm.TU.LG02.716, evm.TU.LG03.1482 ... evm.TU.LG03.622, evm.TU.LG04.2290, evm.TU.LG07.681
Plantaginaceae	Plantago ovata	5	Pov_00001380, Pov_00020907, Pov_00026906, Pov_00027396 ... Pov_00035208
Poaceae	Echinochloa crus-galli	17	AH01.1948, AH02.905, AH03.2318, AH03.4121, AH08.1913 ... BH01.2289, BH02.1219, BH03.2452, BH03.4464, BH06.1511, CH01.2386, CH01.2389, CH02.1347, CH06.1658, CH07.49, CH08.2185, CH09.500
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0004500, gene-QOZ80_1BG0052930 ... gene-QOZ80_2AG0125560, gene-QOZ80_2BG0181220, gene-QOZ80_4AG0324200, gene-QOZ80_6AG0520720, gene-QOZ80_6AG0538860, gene-QOZ80_6BG0473210, gene-QOZ80_6BG0492140, gene-QOZ80_7AG0582460, gene-QOZ80_7BG0613570, gene-QOZ80_8AG0635420, gene-QOZ80_8BG0664290
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0038160.1.CDS1 ... HORVU.MOREX.r3.2HG0105080.1.CDS1, HORVU.MOREX.r3.3HG0255490.1.CDS1, HORVU.MOREX.r3.4HG0380230.1.CDS1, HORVU.MOREX.r3.5HG0489070.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_005993, gene-QYE76_017054, gene-QYE76_030935 ... gene-QYE76_038354, gene-QYE76_038656, gene-QYE76_052199, gene-QYE76_052233
Poaceae	Oryza coarctata	4	Oco01G007370, Oco02G007650, Oco03G018010, Oco07G001830
Poaceae	Oryza sativa	6	LOC_Os01g16120.1, LOC_Os04g16970.1, LOC_Os07g48680.1 ... LOC_Os08g38460.1, LOC_Os09g30160.1, LOC_Os10g30310.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G225600, gene-BS78_02G217400 ... gene-BS78_02G396600, gene-BS78_07G175400
Poaceae	Puccinellia tenuiflora	1	Pt_Ctg00391
Poaceae	Sporobolus alterniflorus	15	Chr03G001520, Chr06G013830, Chr08G003600, Chr0G015210 ... Chr10G007860, Chr14G009960, Chr14G015870, Chr15G014600, Chr16G016420, Chr17G015840, Chr19G000060, Chr21G014910, Chr26G003340, Chr27G017680, Chr29G003140
Poaceae	Thinopyrum elongatum	4	Tel2E01G145500, Tel2E01G216100, Tel3E01G317000 ... Tel5E01G405900
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG019660, gene_TRIDC1BG025430 ... gene_TRIDC2AG007190, gene_TRIDC2AG011510, gene_TRIDC2BG008390, gene_TRIDC2BG014350, gene_TRIDC3AG025380, gene_TRIDC3BG029080, gene_TRIDC5AG039540, gene_TRIDC5BG042000
Poaceae	Triticum aestivum	17	TraesCS1B02G156500.1.cds1, TraesCS1D02G138900.1.cds1 ... TraesCS2A02G065200.1.cds1, TraesCS2A02G099300.1.cds1, TraesCS2B02G077400.1.cds1, TraesCS2B02G115500.1.cds1, TraesCS2D02G063300.1.cds1, TraesCS2D02G098400.1.cds1, TraesCS3A02G182100.1.cds1, TraesCS3B02G212200.1.cds1, TraesCS3D02G186800.2.cds1, TraesCS4A02G128700.1.cds1, TraesCS4B02G176000.1.cds1, TraesCS4B02G176100.1.cds1, TraesCS4D02G177900.1.cds1, TraesCS5A02G253700.1.cds1, TraesCS5B02G252600.1.cds1
Poaceae	Zea mays	7	Zm00001eb033790_P001, Zm00001eb047430_P001 ... Zm00001eb087090_P001, Zm00001eb101500_P001, Zm00001eb111800_P001, Zm00001eb222700_P001, Zm00001eb316120_P001
Poaceae	Zoysia japonica	15	nbis-gene-17330, nbis-gene-17331, nbis-gene-19505 ... nbis-gene-19556, nbis-gene-24522, nbis-gene-27608, nbis-gene-28811, nbis-gene-30504, nbis-gene-32489, nbis-gene-33296, nbis-gene-36, nbis-gene-47615, nbis-gene-48037, nbis-gene-56339, nbis-gene-56981
Poaceae	Zoysia macrostachya	12	Zma_g16094, Zma_g19407, Zma_g23182, Zma_g24296, Zma_g29672 ... Zma_g29673, Zma_g30507, Zma_g32743, Zma_g32778, Zma_g5824, Zma_g7115, Zma_g9695
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.107, evm.TU.LG03.1504, evm.TU.LG13.153 ... evm.TU.LG13.758
Posidoniaceae	Posidonia oceanica	11	gene.Posoc02g06360, gene.Posoc02g06370, gene.Posoc02g06390 ... gene.Posoc02g06400, gene.Posoc02g06420, gene.Posoc02g22330, gene.Posoc02g22360, gene.Posoc06g09090, gene.Posoc07g10920, gene.Posoc07g10930, gene.Posoc07g10940
Rhizophoraceae	Bruguiera sexangula	9	evm.TU.Scaffold_15_RagTag.135, evm.TU.Scaffold_15_RagTag.24 ... evm.TU.Scaffold_17_RagTag.187, evm.TU.Scaffold_17_RagTag.864, evm.TU.Scaffold_3_RagTag.1037, evm.TU.Scaffold_5_RagTag.1650, evm.TU.Scaffold_6_RagTag.1634, evm.TU.Scaffold_6_RagTag.2137, evm.TU.Scaffold_9_RagTag.1455
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12146, nbisL1-mrna-16991, nbisL1-mrna-20607 ... nbisL1-mrna-23150, nbisL1-mrna-23574, nbisL1-mrna-26310
Rhizophoraceae	Ceriops tagal	9	nbisL1-mrna-10473, nbisL1-mrna-11185, nbisL1-mrna-15275 ... nbisL1-mrna-16333, nbisL1-mrna-16552, nbisL1-mrna-7068, nbisL1-mrna-7870, nbisL1-mrna-9201, nbisL1-mrna-9273
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-12138, nbisL1-mrna-14719, nbisL1-mrna-17469 ... nbisL1-mrna-21446, nbisL1-mrna-2303, nbisL1-mrna-6571
Rhizophoraceae	Kandelia candel	10	add.evm.TU.utg000001l.45, add.evm.TU.utg000001l.5 ... add.evm.TU.utg000001l.8, add.evm.TU.utg000003l.361, add.evm.TU.utg000011l.390, add.evm.TU.utg000011l.542, add.evm.TU.utg000013l.182, add.evm.TU.utg000013l.39, add.evm.TU.utg000019l.275, evm.TU.utg000006l.950
Rhizophoraceae	Kandelia obovata	5	Maker00002294, Maker00004395, Maker00004622, Maker00008410 ... Maker00013034
Rhizophoraceae	Rhizophora apiculata	11	nbisL1-mrna-18203, nbisL1-mrna-19546, nbisL1-mrna-21070 ... nbisL1-mrna-21347, nbisL1-mrna-21388, nbisL1-mrna-22102, nbisL1-mrna-22108, nbisL1-mrna-22364, nbisL1-mrna-22834, nbisL1-mrna-22867, nbisL1-mrna-23063
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-14178, nbisL1-mrna-15906, nbisL1-mrna-1726 ... nbisL1-mrna-2598, nbisL1-mrna-2611, nbisL1-mrna-2799, nbisL1-mrna-2902, nbisL1-mrna-4442
Salicaceae	Populus euphratica	8	populus_peu07115, populus_peu07706, populus_peu13827 ... populus_peu13828, populus_peu20949, populus_peu21093, populus_peu22978, populus_peu26864
Solanaceae	Lycium barbarum	5	gene-LOC132615050, gene-LOC132618389, gene-LOC132636692 ... gene-LOC132641012, gene-LOC132642616
Solanaceae	Solanum chilense	10	SOLCI000451600, SOLCI001549000, SOLCI003612100 ... SOLCI004079100, SOLCI004121600, SOLCI004329500, SOLCI005231100, SOLCI005331200, SOLCI006017900, SOLCI007383600
Solanaceae	Solanum pennellii	6	gene-LOC107005504, gene-LOC107010709, gene-LOC107016026 ... gene-LOC107017100, gene-LOC107018763, gene-LOC107023960
Tamaricaceae	Reaumuria soongarica	4	STRG.16539_chr06_+, STRG.22924_chr05_-, STRG.29729_chr10_+ ... gene_1361
Tamaricaceae	Tamarix chinensis	4	TC03G0124, TC03G0279, TC04G1338, TC09G0100
Zosteraceae	Zostera marina	4	Zosma01g32920.v3.1, Zosma02g03210.v3.1, Zosma02g03220.v3.1 ... Zosma02g03230.v3.1