Basic Information
Locus ID:
nbisL1-mrna-14705
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 1817218 | 1820703 | + | nbisL1-mrna-14705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 73,921.51 Da | 39.06 | 93.14 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 21 | 58 | 1.2E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 319 | 357 | 0.033 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 109 | 146 | 2.3E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 362 | 420 | 9.9E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 433 | 1.28E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 534 | 645 | 2.71E-11 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 315 | 8.1E-73 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 319 | 443 | 3.0E-33 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 520 | 656 | 8.2E-19 | - |
| SMART | SM00369 | LRR_typ_2 | 131 | 156 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 84 | 106 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 407 | 431 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 180 | 203 | 8.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 0.0082 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 406 | 37.0 | IPR003591 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 475 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_002324686.4 | receptor-like kinase TMK4 [Populus trichocarpa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U5PL00 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology