Basic Information
Locus ID:
nbisL1-mrna-1466
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12041967 | 12047283 | + | nbisL1-mrna-1466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 82,337.90 Da | 41.41 | 90.13 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 359 | 657 | 9.09715E-158 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 40 | 341 | 1.33532E-161 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 364 | 653 | 2.4E-30 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 340 | 2.54E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 359 | 658 | 8.89E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 358 | 657 | 4.0E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 39 | 340 | 8.1E-39 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 40 | 342 | 32.104504 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 358 | 658 | 31.560457 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_039061114.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Hibiscus syriacus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6A3C913 | glycerophosphodiester phosphodiesterase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00012370pilonHSYRG00164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology