Basic Information
Locus ID:
nbisL1-mrna-14563
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10278632 | 10285356 | - | nbisL1-mrna-14563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 108,948.40 Da | 54.12 | 88.09 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 840 | 881 | 1.4406E-17 | - |
| CDD | cd12108 | Hr-like | 47 | 175 | 1.999E-21 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 48 | 177 | 2.3E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 888 | 943 | 1.3E-23 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 842 | 886 | 7.07E-6 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 778 | 832 | 2.22E-15 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 912 | 950 | 2.5E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 834 | 883 | 1.8E-7 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 196 | 7.2E-21 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 842 | 881 | 8.579733 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 777 | 840 | 27.37604 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 268 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_021665983.1 | zinc finger protein BRUTUS-like At1g18910 [Hevea brasiliensis] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9VPE3 | Zinc finger protein BRUTUS-like At1g18910 OS=Manihot esculenta OX=3983 GN=MANES_06G097400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology