Basic Information
Locus ID:
nbisL1-mrna-14548
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10181816 | 10189303 | - | nbisL1-mrna-14548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 81,322.79 Da | 60.59 | 64.41 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 604 | 742 | 2.89428E-71 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 605 | 741 | 3.9E-51 | IPR000608 |
| Pfam | PF03106 | WRKY DNA -binding domain | 239 | 297 | 3.5E-23 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 231 | 299 | 1.7E-26 | IPR036576 |
| SUPERFAMILY | SSF54495 | UBC-like | 593 | 747 | 2.96E-62 | IPR016135 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 223 | 300 | 1.1E-30 | IPR036576 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 596 | 745 | 3.0E-66 | IPR016135 |
| SMART | SM00774 | WRKY_cls | 238 | 298 | 6.0E-35 | IPR003657 |
| SMART | SM00212 | ubc_7 | 604 | 747 | 5.4E-69 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 601 | 747 | 60.410213 | IPR000608 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 233 | 299 | 27.8867 | IPR003657 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 674 | 689 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| Coils | Coil | Coil | 59 | 86 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_007037253.2 | PREDICTED: probable WRKY transcription factor 61 [Theobroma cacao] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314YUI8 | Putative WRKY transcription factor 61 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_12017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology