Basic Information
Locus ID:
nbisL1-mrna-14537
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 778292 | 781053 | + | nbisL1-mrna-14537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 47,960.91 Da | 30.86 | 73.43 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 24 | 358 | 3.91467E-150 | - |
| Pfam | PF00832 | Ribosomal L39 protein | 389 | 429 | 6.3E-21 | IPR000077 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 352 | 5.5E-83 | IPR001223 |
| SUPERFAMILY | SSF48662 | Ribosomal protein L39e | 383 | 430 | 1.57E-19 | IPR023626 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 258 | 323 | 1.07E-9 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 354 | 8.32E-73 | IPR017853 |
| Gene3D | G3DSA:1.10.1620.10 | Ribosomal protein L39e | 382 | 431 | 5.1E-27 | IPR023626 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 40 | 354 | 1.6E-114 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 257 | 323 | 1.6E-114 | IPR029070 |
| SMART | SM00636 | 2g34 | 26 | 352 | 2.2E-101 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 26 | 368 | 71.544548 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 132 | 140 | - | IPR001579 |
| ProSitePatterns | PS00051 | Ribosomal protein L39e signature. | 410 | 426 | - | IPR020083 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_034907746.1 | class V chitinase-like [Populus alba] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YJ21 | GH18 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_012284 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology