Basic Information
Locus ID:
nbisL1-mrna-14526
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000002F_pilon | 4338854 | 4346123 | + | nbisL1-mrna-14526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 168,257.19 Da | 41.02 | 106.18 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 317 | 605 | 1.65243E-85 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1255 | 1475 | 7.93752E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 631 | 831 | 2.38675E-104 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 938 | 1232 | 2.6458E-95 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 317 | 584 | 1.3E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 949 | 1184 | 1.1E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1274 | 1422 | 2.5E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 649 | 783 | 1.5E-17 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 314 | 613 | 3.53E-36 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 939 | 1233 | 2.35E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 625 | 847 | 1.03E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1251 | 1487 | 3.75E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 288 | 614 | 6.1E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1240 | 1493 | 6.5E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 629 | 860 | 1.9E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 905 | 1238 | 5.3E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 658 | 831 | 4.5E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1283 | 1475 | 4.3E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1259 | 1491 | 16.913568 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 940 | 1220 | 35.605618 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 631 | 854 | 21.822174 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 316 | 597 | 35.491535 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 756 | 770 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 899 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021659378.1 | putative ABC transporter C family member 15 isoform X1 [Hevea brasiliensis] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JCN5 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology