Basic Information
Locus ID:
nbisL1-mrna-14484
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Translocase of chloroplast 90
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 457494 | 461467 | - | nbisL1-mrna-14484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 72,491.84 Da | 46.29 | 92.17 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 597 | 644 | 9.0E-23 | IPR024283 |
| Pfam | PF04548 | AIG1 family | 253 | 386 | 3.7E-21 | IPR006703 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 249 | 392 | 1.37E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 470 | 9.9E-53 | IPR027417 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 249 | 480 | 26.634388 | IPR006703 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 126 | - | - |
| Coils | Coil | Coil | 567 | 587 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_024459909.2 | translocase of chloroplast 90, chloroplastic [Populus trichocarpa] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K9C7 | AIG1-type G domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology