Basic Information
Locus ID:
nbisL1-mrna-14461
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 294868 | 304229 | - | nbisL1-mrna-14461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 124,887.38 Da | 37.54 | 79.57 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 4.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 954 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1100 | 2.06E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 356 | 667 | 7.32E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 313 | 519 | 6.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 837 | 1107 | 3.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 810 | 2.0E-12 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 3.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 582 | 61.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.3E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 872 | 912 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 869 | 84.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 915 | 954 | 6.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 669 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1006 | 1047 | 82.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 922 | 954 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 922 | 954 | 10.469233 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.795317 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.22414 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_027333456.1 | topless-related protein 4-like isoform X2 [Abrus precatorius] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8JPL9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology