Basic Information
Locus ID:
nbisL1-mrna-14449
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002206F_pilon | 220826 | 222781 | + | nbisL1-mrna-14449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 69,489.81 Da | 44.14 | 100.35 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 542 | 563 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 486 | 508 | 0.9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 247 | 270 | 0.014 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 222 | 245 | 1.5 | IPR001611 |
| Pfam | PF12937 | F-box-like | 64 | 98 | 1.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 99 | 1.57E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 182 | 424 | 1.94E-34 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 309 | 648 | 8.11E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 247 | 452 | 3.5E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 454 | 650 | 1.8E-31 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 64 | 99 | 6.9E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 124 | 246 | 1.0E-12 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 69.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 540 | 565 | 0.048 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 486 | 511 | 0.36 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 566 | 590 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 248 | 273 | 2.1E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 460 | 485 | 96.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 513 | 538 | 98.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 354 | 379 | 1.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 222 | 247 | 3.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 433 | 458 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 196 | 221 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 274 | 299 | 1.2E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 405 | 3.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 592 | 617 | 110.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_034918850.1 | - | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JKB4 | EIN3-binding F-box protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology