Basic Information
Locus ID:
nbisL1-mrna-14445
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000002F_pilon | 3700759 | 3709256 | + | nbisL1-mrna-14445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 37,083.67 Da | 53.73 | 90.17 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 12 | 63 | 8.96953E-18 | - |
| Pfam | PF00240 | Ubiquitin family | 5 | 65 | 5.7E-10 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 243 | 274 | 1.4E-9 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 300 | 335 | 4.6E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 112 | 150 | 2.2E-13 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 243 | 282 | 6.02E-11 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 5 | 65 | 2.0E-12 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 279 | 341 | 3.9E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 96 | 152 | 6.81E-9 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 3 | 66 | 3.8E-16 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 105 | 153 | 5.6E-18 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 237 | 275 | 6.9E-11 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 291 | 339 | 5.5E-23 | - |
| SMART | SM00165 | uba_6 | 300 | 337 | 8.2E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 64 | 2.1E-5 | IPR000626 |
| SMART | SM00165 | uba_6 | 112 | 152 | 7.0E-6 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 110 | 153 | 11.558912 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 298 | 338 | 14.836119 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 4 | 65 | 12.313198 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 311 | 325 | 3.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 326 | 341 | 3.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 294 | 310 | 3.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 245 | 267 | 3.8E-32 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022715400.1 | ubiquitin receptor RAD23b-like isoform X3 [Durio zibethinus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2KD69 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology