Basic Information
Locus ID:
nbisL1-mrna-14421
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9050190 | 9059088 | - | nbisL1-mrna-14421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 140,361.66 Da | 50.62 | 80.23 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 38 | 164 | 6.03337E-34 | - |
| CDD | cd12108 | Hr-like | 298 | 426 | 6.13967E-15 | - |
| CDD | cd12108 | Hr-like | 645 | 805 | 5.548E-26 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1117 | 1160 | 1.39489E-16 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 43 | 166 | 2.0E-10 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 643 | 806 | 1.6E-7 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1117 | 1159 | 1.4E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 989 | 1064 | 1.5E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1165 | 1222 | 4.5E-23 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 982 | 1045 | 5.89E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1117 | 1163 | 6.28E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1055 | 1111 | 1.57E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 183 | 1.1E-30 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 638 | 871 | 8.0E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 297 | 444 | 2.6E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1113 | 1162 | 8.4E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1189 | 1233 | 1.0E-15 | - |
| SMART | SM00184 | ring_2 | 1118 | 1159 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1054 | 1117 | 29.635014 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 982 | 1051 | 24.385384 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1118 | 1160 | 11.338544 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021653202.1 | zinc finger protein BRUTUS-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | B9T628 | Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1197660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology