Basic Information
Locus ID:
nbisL1-mrna-14420
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9036304 | 9043251 | + | nbisL1-mrna-14420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 60,821.28 Da | 65.60 | 77.31 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 365 | 540 | 4.03672E-108 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 363 | 469 | 5.1E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 19 | 112 | 4.8E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 365 | 496 | 2.88E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 345 | 540 | 3.2E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 7 | 127 | 2.4E-32 | - |
| SMART | SM00232 | pad1_6 | 365 | 493 | 1.6E-18 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 366 | 496 | 31.497686 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 301 | - | - |
| Coils | Coil | Coil | 100 | 120 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_012093028.1 | AMSH-like ubiquitin thioesterase 1 [Jatropha curcas] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M3F9 | AMSH-like ubiquitin thioesterase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology