Basic Information
Locus ID:
nbisL1-mrna-14411
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 19262705 | 19267453 | + | nbisL1-mrna-14411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 48,493.05 Da | 39.19 | 71.18 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 361 | 389 | 3.7E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 322 | 350 | 5.2E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 285 | 307 | 3.0E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 357 | 390 | 1.4E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 278 | 311 | 3.27E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 319 | 350 | 5.49E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 390 | 424 | 1.9E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 353 | 389 | 2.9E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 316 | 352 | 2.5E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 274 | 314 | 8.7E-14 | - |
| SMART | SM00547 | zf_4 | 324 | 348 | 4.5E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 396 | 420 | 0.074 | IPR001876 |
| SMART | SM00547 | zf_4 | 363 | 387 | 3.8E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 285 | 309 | 2.0E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 283 | 312 | 9.913063 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 394 | 423 | 9.608173 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 361 | 390 | 10.319582 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 322 | 351 | 9.664635 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 398 | 417 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 365 | 384 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 287 | 306 | - | IPR001876 |
| Coils | Coil | Coil | 228 | 248 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_018858015.1 | - | 0 |
| TrEMBL | A0A2P2IWN0 | Zinc finger protein VAR3ic OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology