Basic Information
Locus ID:
nbisL1-mrna-1439
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
UBA-like domain (DUF1421)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 6023882 | 6027541 | - | nbisL1-mrna-1439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 50,313.60 Da | 68.29 | 76.52 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07223 | UBA-like domain (DUF1421) | 416 | 459 | 3.2E-17 | IPR010820 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 343 | - | - |
| Coils | Coil | Coil | 75 | 109 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14540.1 | Protein of unknown function (DUF1421). | 0 |
| RefSeq | XP_002511348.2 | uncharacterized protein LOC8278314 isoform X1 [Ricinus communis] | 0 |
| TrEMBL | A0A2P2Q3F7 | Uncharacterized protein LOC8278314 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17772, jg17773, jg40389 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12710 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah007373, Ah007375, Ah026624 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18950, Sbi_jg37405 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5245 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019857 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22481, Sgl27700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009038, gene:ENSEOMG00000026548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016430, CQ.Regalona.r1.4BG0013680 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30022870, pistato.v30139690 |
| Apiaceae | Apium graveolens | 1 | Ag9G00456 |
| Arecaceae | Cocos nucifera | 6 | COCNU_05G004260, COCNU_05G010760, COCNU_13G000490 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703781, gene-LOC103711568, gene-LOC103715926 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.367.V1.1, AsparagusV1_05.2964.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G24961 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G01560.1, AT5G14540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g00490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g024020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1865 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1945 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g05390, gene.Cymno09g09920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0234s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02240 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.316, evm.TU.LG10.692 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024160 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22465 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.505, AH05.1111, BH02.524, BH05.1375, CH02.571 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0011270, gene-QOZ80_1BG0059870 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0026430.1, HORVU.MOREX.r3.3HG0233830.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009825, gene-QYE76_049958, gene-QYE76_049967 |
| Poaceae | Oryza coarctata | 4 | Oco01G002780, Oco02G002820, Oco09G003280, Oco10G003230 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g07520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G050400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0200405, Pt_Chr0207408, Pt_Chr0501688, Pt_Chr0501737 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G019530, Chr03G004990, Chr05G010580, Chr08G000130 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G211300, Tel3E01G162600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG014250, gene_TRIDC1BG019920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G113700.1, TraesCS1B02G134000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb122990_P001, Zm00001eb336590_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13119, nbis-gene-18103, nbis-gene-23537 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10028, Zma_g26514, Zma_g7675 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2174, evm.TU.LG14.1365 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g20450, gene.Posoc04g00660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.447, evm.TU.Scaffold_6_RagTag.147 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14964, nbisL1-mrna-28915 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1557, nbisL1-mrna-634 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-122, nbisL1-mrna-1881 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.286, evm.TU.utg000011l.103 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000094, Maker00007171 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11870, nbisL1-mrna-14619 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1439, nbisL1-mrna-17449 |
| Salicaceae | Populus euphratica | 3 | populus_peu01048, populus_peu28688, populus_peu30116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621309 |
| Solanaceae | Solanum chilense | 2 | SOLCI002260400, SOLCI005663200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007591, gene-LOC107011549 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25547_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0989 |
| Zosteraceae | Zostera marina | 2 | Zosma06g00910.v3.1, Zosma06g06250.v3.1 |