Basic Information
Locus ID:
nbisL1-mrna-14373
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001486F_pilon | 1820290 | 1824338 | - | nbisL1-mrna-14373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 75,996.12 Da | 47.05 | 68.59 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 537 | 621 | 6.5E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 638 | 669 | 1.1E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 537 | 622 | 2.2E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 384 | - | - |
| Coils | Coil | Coil | 575 | 595 | - | - |
| Coils | Coil | Coil | 526 | 563 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_043815083.1 | uncharacterized protein LOC110621561 [Manihot esculenta] | 0 |
| TrEMBL | A0A2P2IPX7 | PAPA-1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology