Basic Information
Locus ID:
nbisL1-mrna-14330
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PHD finger protein MALE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001486F_pilon | 1185967 | 1188396 | + | nbisL1-mrna-14330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 76,757.25 Da | 42.99 | 84.62 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 615 | 660 | 1.38623E-24 | - |
| Pfam | PF00628 | PHD-finger | 616 | 662 | 3.4E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 604 | 663 | 8.23E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 600 | 664 | 8.5E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 615 | 661 | 2.9E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 613 | 663 | 8.5021 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 616 | 660 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_050232280.1 | PHD finger protein MALE STERILITY 1 [Mercurialis annua] | 0 |
| Q9FMS5 | PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9U776 | PHD domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_17G089400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology