Basic Information
Locus ID:
nbisL1-mrna-14326
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000002F_pilon | 2858404 | 2870408 | + | nbisL1-mrna-14326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 93,202.24 Da | 33.26 | 87.95 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 45 | 285 | 1.45713E-159 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 282 | 349 | 1.6E-8 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 436 | 629 | 1.9E-43 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 285 | 2.6E-77 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 712 | 819 | 9.9E-10 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 33 | 284 | 2.22E-83 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 279 | 355 | 4.25E-14 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 391 | 822 | 3.77E-111 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 299 | 356 | 1.2E-19 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 412 | 678 | 4.8E-91 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 698 | 827 | 8.0E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 296 | 2.9E-102 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 265 | 332 | 0.0028 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_043812025.1 | alpha-mannosidase At3g26720 isoform X1 [Manihot esculenta] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067L081 | Alpha-mannosidase OS=Jatropha curcas OX=180498 GN=JCGZ_26874 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology