halophFGD

Basic Information

Locus ID: nbisL1-mrna-14300

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Guanine nucleotide-binding protein subunit beta-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr06	18157308	18159072	-	nbisL1-mrna-14300

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.71	36,334.69 Da	29.84	87.83	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	11	326	4.49557E-87	-
Pfam	PF00400	WD domain, G-beta repeat	103	137	7.5E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	150	183	1.0E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	13	47	0.04	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	303	326	2.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	241	265	7.5E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	190	225	3.4E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	59	95	3.9E-7	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	9	328	2.04E-75	IPR036322
Gene3D	G3DSA:2.130.10.10	-	9	331	1.5E-141	IPR015943
SMART	SM00320	WD40_4	56	95	1.7E-6	IPR001680
SMART	SM00320	WD40_4	186	225	7.8E-11	IPR001680
SMART	SM00320	WD40_4	8	48	1.1E-4	IPR001680
SMART	SM00320	WD40_4	228	265	0.034	IPR001680
SMART	SM00320	WD40_4	139	183	1.7E-8	IPR001680
SMART	SM00320	WD40_4	98	137	4.0E-9	IPR001680
SMART	SM00320	WD40_4	286	327	0.042	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	105	137	14.78598	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	63	104	14.78598	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	295	332	9.414692	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	105	137	12.209223	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	63	99	11.761044	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	15	57	10.575287	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	149	192	12.714052	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	149	186	10.284687	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	193	230	12.209223	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	303	332	10.241105	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	193	234	16.189545	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	212	226	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	170	184	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	82	96	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	170	184	1.7E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	212	226	1.7E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	124	138	1.7E-8	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14753 (guanine nucleotide-binding protein subunit beta-2-like 1 protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48630.1	receptor for activated C kinase 1B. Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.
RefSeq	XP_021660881.1	guanine nucleotide-binding protein subunit beta-like protein isoform X1 [Hevea brasiliensis]
Swiss-Prot	O24076	Small ribosomal subunit protein RACK1 OS=Medicago sativa OX=3879 GN=GB1 PE=2 SV=1
TrEMBL	A0A2P2KZH8	WD_REPEATS_REGION domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13319, jg13320, jg27000
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19983, gene_23890
Amaranthaceae	Atriplex hortensis	1	Ah002270
Amaranthaceae	Beta vulgaris	1	BVRB_5g111970
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg32204, Sbi_jg57196
Amaranthaceae	Salicornia europaea	1	Seu_jg24934
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022192
Amaranthaceae	Suaeda glauca	2	Sgl53978, Sgl59303
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004264, gene:ENSEOMG00000021259 ... gene:ENSEOMG00000024746
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0014830, CQ.Regalona.r1.5BG0015800
Anacardiaceae	Pistacia vera	1	pistato.v30150310
Apiaceae	Apium graveolens	2	Ag11G03770, Ag5G00067
Arecaceae	Cocos nucifera	5	COCNU_02G005670, COCNU_02G005690, COCNU_06G008140 ... scaffold001198G000060, scaffold012197G000050
Arecaceae	Phoenix dactylifera	5	gene-LOC103716866, gene-LOC103719002, gene-LOC103722987 ... gene-LOC103723475, gene-LOC120110522
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3204.V1.1, AsparagusV1_05.750.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G23993, Ftri6G09016
Brassicaceae	Arabidopsis thaliana	3	AT1G18080.1, AT1G48630.1, AT3G18130.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008183m.g.v1.0, Thhalv10011646m.g.v1.0 ... Thhalv10021128m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g16100.v2.2, Sp1g35600.v2.2, Sp3g16240.v2.2
Brassicaceae	Brassica nigra	6	BniB01g046490.2N, BniB03g007440.2N, BniB03g027900.2N ... BniB04g032580.2N, BniB04g062020.2N, BniB07g007110.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2865
Casuarinaceae	Casuarina glauca	1	Cgl03G3013
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g02150
Dunaliellaceae	Dunaliella salina	1	Dusal.0241s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g00270
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.268
Plantaginaceae	Plantago ovata	3	Pov_00018619, Pov_00033244, Pov_00033291
Plumbaginaceae	Limonium bicolor	4	Lb3G16516, Lb3G16524, Lb5G29571, Lb6G29907
Poaceae	Echinochloa crus-galli	6	AH02.2797, AH05.1476, BH02.2881, BH05.1645, CH02.3653 ... CH05.1854
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0029020, gene-QOZ80_1BG0079240 ... gene-QOZ80_5AG0364080, gene-QOZ80_5BG0412180
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0084340.1, HORVU.MOREX.r3.3HG0280990.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015641, gene-QYE76_054631
Poaceae	Oryza coarctata	4	Oco01G017580, Oco02G017820, Oco09G016160, Oco10G015950
Poaceae	Oryza sativa	2	LOC_Os01g49290.1, LOC_Os05g47890.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G234800, gene-BS78_09G227600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0503641, Pt_Chr0602392, Pt_Chr0602403
Poaceae	Sporobolus alterniflorus	8	Chr01G015230, Chr02G012360, Chr03G013770, Chr05G021280 ... Chr06G022680, Chr12G021620, Chr18G014700, Chr22G002000
Poaceae	Thinopyrum elongatum	2	Tel1E01G615800, Tel3E01G441700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG055510, gene_TRIDC1BG063850 ... gene_TRIDC3AG039410, gene_TRIDC3BG044470
Poaceae	Triticum aestivum	6	TraesCS1A02G378000.1, TraesCS1B02G398800.1 ... TraesCS1D02G385000.1, TraesCS3A02G263900.1, TraesCS3B02G297300.1, TraesCS3D02G264000.1
Poaceae	Zea mays	2	Zm00001eb294990_P001, Zm00001eb342960_P001
Poaceae	Zoysia japonica	4	nbis-gene-12605, nbis-gene-13743, nbis-gene-24932 ... nbis-gene-26144
Poaceae	Zoysia macrostachya	5	Zma_g10901, Zma_g10902, Zma_g27334, Zma_g28749, Zma_g8453
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.2251, evm.TU.LG05.754, evm.TU.LG14.1424 ... evm.TU.LG25.572
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g19330, gene.Posoc04g03680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60404.5, evm.TU.Scaffold_11_RagTag.642 ... evm.TU.Scaffold_4_RagTag.715
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14300, nbisL1-mrna-28642
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3231, nbisL1-mrna-4299
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12332, nbisL1-mrna-1651
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000061l.4
Rhizophoraceae	Kandelia obovata	2	Maker00000606, Maker00008692
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14440, nbisL1-mrna-948
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19212, nbisL1-mrna-8389
Salicaceae	Populus euphratica	2	populus_peu28285, populus_peu29736
Solanaceae	Lycium barbarum	2	gene-LOC132599878, gene-LOC132633235
Solanaceae	Solanum chilense	2	SOLCI000423000, SOLCI006758900
Solanaceae	Solanum pennellii	3	gene-LOC107007696, gene-LOC107014559, gene-LOC107023263
Tamaricaceae	Reaumuria soongarica	1	gene_12652
Tamaricaceae	Tamarix chinensis	2	TC05G1040, TC09G1699
Zosteraceae	Zostera marina	2	Zosma04g05450.v3.1, Zosma05g32250.v3.1