Basic Information
Locus ID:
nbisL1-mrna-14276
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Cleavage and polyadenylation specificity factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001486F_pilon | 754710 | 759865 | - | nbisL1-mrna-14276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 32,433.27 Da | 54.87 | 100.87 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 235 | 277 | 6.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 282 | 1.51E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 283 | 8.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 236 | 276 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 277 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 78 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_022726441.1 | E3 ubiquitin protein ligase RIE1-like [Durio zibethinus] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JZ97 | E3 ubiquitin protein ligase RIE1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology