Basic Information
Locus ID:
nbisL1-mrna-14269
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000002F_pilon | 2481190 | 2485120 | - | nbisL1-mrna-14269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 49,150.23 Da | 43.93 | 63.09 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 343 | 7.07E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 344 | 1.3E-9 | IPR013083 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 272 | 344 | 15.649809 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 361 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05230.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012091141.1 | U-box domain-containing protein 62 [Jatropha curcas] | 0 |
| Q6DBN5 | U-box domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=PUB62 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LR92 | Uncharacterized protein MANES_10G001500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg2494, jg34081, jg9695 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17092, gene_20559 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038418 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g042410, BVRB_9g203510 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14394, Sbi_jg30124, Sbi_jg43578, Sbi_jg53556 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10189, Seu_jg18324 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004087, GOSA_00012575 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl26188, Sgl66075, Sgl70390, Sgl78124, Sgl78131 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000013896, gene:ENSEOMG00000018590 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0002890, CQ.Regalona.r1.2BG0004070 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178060, pistato.v30219850 |
| Apiaceae | Apium graveolens | 2 | Ag2G02652, Ag8G01990 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G004570, COCNU_09G006260, COCNU_12G006240 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103706256, gene-LOC103708904, gene-LOC103717222 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1783.V1.1, AsparagusV1_07.526.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri1G02336, Ftri5G15313, Ftri6G19734, FtriNA26420 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G40640.1, AT3G19895.1, AT5G05230.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10003285m.g.v1.0, Thhalv10013906m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g17900.v2.2, Sp4g22970.v2.2, Sp6g37600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055390.2N, BniB07g050910.2N, BniB08g026300.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0025, Ceq07G0609 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0027, Cgl07G0602 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g16720, gene.Cymno14g05270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g00850, gene.Thate07g08940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7388 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1693, evm.TU.LG03.963 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011617, Pov_00019414 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb2G14485, Lb3G18376, Lb6G29925, Lb6G30650, Lb6G30875 ... |
| Poaceae | Echinochloa crus-galli | 5 | AH01.349, AH07.4034, BH01.377, BH07.3847, CH01.228 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0524700.1, HORVU.MOREX.r3.6HG0633160.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_020029, gene-QYE76_020033, gene-QYE76_020034 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G026150, Oco04G026580, Oco05G027090, Oco06G028120 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g58280.1, LOC_Os03g60140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G035300, gene-BS78_04G328800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105740 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G742600, Tel6E01G768200, Tel6E01G768300 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG067090, gene_TRIDC5BG072280 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G469100.2, TraesCS5B02G481600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb062220_P003, Zm00001eb259400_P001 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG10.68, evm.TU.LG13.1404, evm.TU.LG17.63 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g33240, gene.Posoc06g10850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.298, evm.TU.Scaffold_17_RagTag.665 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14122, nbisL1-mrna-16573, nbisL1-mrna-23348 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13884, nbisL1-mrna-7403 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14269, nbisL1-mrna-19984 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.178, evm.TU.utg000013l.354 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004299, Maker00010071 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10755, nbisL1-mrna-421 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14384, nbisL1-mrna-18916 |
| Salicaceae | Populus euphratica | 3 | populus_peu06714, populus_peu19155, populus_peu20596 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614127, gene-LOC132640444 |
| Solanaceae | Solanum chilense | 2 | SOLCI002061500, SOLCI006470300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018063, gene-LOC107018460 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11296_chr05_-, gene_4762 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0114, TC02G3076 |
| Zosteraceae | Zostera marina | 2 | Zosma02g22160.v3.1, Zosma05g34070.v3.1 |