Basic Information
Locus ID:
nbisL1-mrna-14262
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001486F_pilon | 666365 | 667672 | - | nbisL1-mrna-14262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 47,294.24 Da | 39.09 | 92.44 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 14 | 333 | 1.7E-81 | IPR000490 |
| Pfam | PF07983 | X8 domain | 351 | 422 | 1.6E-18 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 14 | 333 | 3.2E-85 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 344 | 433 | 1.6E-10 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 13 | 339 | 1.6E-115 | - |
| SMART | SM00768 | X8_cls | 350 | 432 | 3.6E-40 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 248 | 261 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.3 | - | 0 |
| RefSeq | XP_021687766.1 | glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2C9U5S2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology