Basic Information
Locus ID:
nbisL1-mrna-14230
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7304377 | 7307986 | - | nbisL1-mrna-14230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 99,338.23 Da | 35.24 | 91.40 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 587 | 860 | 1.44852E-93 | - |
| Pfam | PF13855 | Leucine rich repeat | 366 | 424 | 1.4E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 113 | 149 | 1.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 323 | 361 | 0.026 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 62 | 3.4E-6 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 583 | 855 | 4.4E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 557 | 857 | 1.13E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 54 | 438 | 1.16E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 319 | 8.4E-75 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 659 | 882 | 1.4E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 545 | 658 | 2.7E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 324 | 448 | 5.5E-32 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 111 | 134 | 0.28 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 207 | 72.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 581 | 861 | 1.9E-45 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 135 | 160 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 387 | 410 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 435 | 53.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 88 | 110 | 96.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 581 | 861 | 41.91227 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 706 | 718 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 587 | 609 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 473 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011017684.1 | PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835J523 | Protein kinase domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf18G0107600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology