Basic Information
Locus ID:
nbisL1-mrna-14225
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001486F_pilon | 401459 | 404466 | - | nbisL1-mrna-14225 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 45,884.81 Da | 42.27 | 89.56 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 248 | 0.088 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 317 | 372 | 2.4E-4 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 58 | 389 | 1.18E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 62 | 397 | 6.1E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 177 | 215 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 391 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 257 | 0.72 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 266 | 9.338814 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 59 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_021600013.1 | SEC12-like protein 2 [Manihot esculenta] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology