HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: nbisL1-mrna-14184
Species & Taxonomic ID: Rhizophora apiculata & 106626
Genome Assembly: GCA_037832385.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr3 6882302 6887797 - nbisL1-mrna-14184
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.03 87,508.07 Da 41.20 82.80 -0.33
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 403 451 1.6E-9 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 181 241 2.5E-15 IPR002885
Pfam PF13812 Pentatricopeptide repeat domain 128 168 0.0093 IPR002885
Pfam PF13041 PPR repeat family 473 519 2.8E-12 IPR002885
Pfam PF13041 PPR repeat family 337 380 7.1E-8 IPR002885
Pfam PF13041 PPR repeat family 267 310 6.5E-13 IPR002885
SUPERFAMILY SSF81901 HCP-like 193 373 1.7E-7 -
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 288 388 1.3E-26 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 390 578 6.0E-44 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 123 287 5.9E-45 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 196 228 1.5E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 160 194 0.0031 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 442 475 3.2E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 129 158 0.0019 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 230 264 6.3E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 337 369 5.1E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 267 300 1.2E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 301 334 6.9E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 406 440 6.4E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 476 509 1.0E-6 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 334 368 10.972319 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 228 263 11.049048 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 439 473 10.610596 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 193 227 13.471496 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 299 333 11.016164 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 158 192 9.317163 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 509 543 10.39137 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 474 508 11.619036 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 404 438 11.355965 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 264 298 12.287675 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K17710 (pentatricopeptide repeat domain-containing protein 1)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G21222.1 protein kinase family protein. 0
RefSeq XP_034699850.1 pentatricopeptide repeat-containing protein At5g25630-like isoform X2 [Vitis riparia] 0
Swiss-Prot Q8S9D1 Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1 0
TrEMBL A0A2P2J6C0 Uncharacterized protein MANES_03G021600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg3824, jg7860
Aizoaceae Mesembryanthemum crystallinum 2 gene_10714, gene_8166
Amaranthaceae Atriplex hortensis 2 Ah014544, Ah034904
Amaranthaceae Beta vulgaris 4 BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae Salicornia bigelovii 4 Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae Salicornia europaea 2 Seu_jg16657, Seu_jg19774
Amaranthaceae Suaeda aralocaspica 1 GOSA_00007807
Amaranthaceae Suaeda glauca 5 Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ...
gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ...
CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae Pistacia vera 2 pistato.v30253400, pistato.v30256590
Apiaceae Apium graveolens 2 Ag10G01538, Ag7G00293
Arecaceae Cocos nucifera 1 COCNU_03G012070
Arecaceae Phoenix dactylifera 1 gene-LOC103710907
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ...
AsparagusV1_07.417.V1.1
Asteraceae Flaveria trinervia 1 Ftri3G24253
Brassicaceae Arabidopsis thaliana 2 AT5G21222.1, AT5G25630.2
Brassicaceae Eutrema salsugineum 2 Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae Brassica nigra 3 BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq04G2119, Ceq06G1498
Casuarinaceae Casuarina glauca 3 Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae Thalassia testudinum 1 gene.Thate09g15860
Nitrariaceae Nitraria sibirica 2 evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae Plantago ovata 1 Pov_00003850
Plumbaginaceae Limonium bicolor 2 Lb7G34995, Lb7G35002
Poaceae Echinochloa crus-galli 3 AH06.2290, BH07.3959, CH06.2313
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0248630.1
Poaceae Lolium multiflorum 2 gene-QYE76_051474, gene-QYE76_051482
Poaceae Oryza coarctata 2 Oco01G005680, Oco02G005770
Poaceae Paspalum vaginatum 1 gene-BS78_10G191200
Poaceae Puccinellia tenuiflora 2 Pt_Chr0204886, Pt_Chr0205057
Poaceae Sporobolus alterniflorus 3 Chr07G014820, Chr21G007420, Chr31G007880
Poaceae Thinopyrum elongatum 1 Tel3E01G276300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae Triticum aestivum 3 TraesCS3A02G153300.1, TraesCS3B02G179900.1 ...
TraesCS3D02G160600.2
Poaceae Zea mays 1 Zm00001eb315460_P002
Poaceae Zoysia macrostachya 1 Zma_g29714
Portulacaceae Portulaca oleracea 4 evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ...
evm.TU.LG23.1077
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae Bruguiera sexangula 3 evm.TU.60417.2, evm.TU.60418.2 ...
evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-25631
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-14993
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-4712
Rhizophoraceae Kandelia candel 1 evm.TU.utg000008l.1113
Rhizophoraceae Kandelia obovata 1 Maker00001456
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae Populus euphratica 4 populus_peu04868, populus_peu12782, populus_peu21928 ...
populus_peu38110
Solanaceae Lycium barbarum 2 gene-LOC132603462, gene-LOC132635663
Solanaceae Solanum chilense 2 SOLCI000411300, SOLCI005497300
Solanaceae Solanum pennellii 2 gene-LOC107026118, gene-LOC107028521
Tamaricaceae Reaumuria soongarica 2 STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae Tamarix chinensis 2 TC02G0334, TC12G1292
Zosteraceae Zostera marina 1 Zosma05g13580.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.