Basic Information
Locus ID:
nbisL1-mrna-14183
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 16979632 | 16988631 | + | nbisL1-mrna-14183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 110,560.80 Da | 36.62 | 85.47 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 298 | 1.02495E-143 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 340 | 432 | 2.5E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 588 | 801 | 9.7E-45 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 88 | 335 | 7.9E-58 | IPR000602 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 340 | 437 | 4.25E-29 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 445 | 972 | 4.24E-123 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 336 | 7.41E-85 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 463 | 584 | 2.8E-26 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 585 | 849 | 6.3E-93 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 304 | 382 | 4.1E-32 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 383 | 439 | 5.4E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 873 | 975 | 3.2E-11 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 303 | 4.3E-91 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 340 | 414 | 4.2E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_024440866.2 | - | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KS57 | Alpha-mannosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology