Basic Information
Locus ID:
nbisL1-mrna-14182
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 16957878 | 16974306 | + | nbisL1-mrna-14182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 116,814.25 Da | 36.20 | 85.10 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 47 | 333 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 374 | 464 | 9.7E-19 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 642 | 757 | 1.6E-8 | IPR011682 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 782 | 848 | 5.3E-18 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 48 | 369 | 6.0E-90 | IPR000602 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 36 | 372 | 2.37E-106 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 374 | 472 | 8.5E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 478 | 1024 | 4.39E-118 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 338 | 416 | 6.0E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 916 | 1029 | 3.5E-20 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 417 | 472 | 7.1E-20 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 621 | 896 | 2.8E-74 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 488 | 620 | 1.1E-29 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 47 | 337 | 2.9E-118 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 374 | 448 | 1.2E-21 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_043812025.1 | alpha-mannosidase At3g26720 isoform X1 [Manihot esculenta] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MM01 | Alpha-mannosidase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology