Basic Information
Locus ID:
nbisL1-mrna-14171
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
SH3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6772883 | 6776106 | + | nbisL1-mrna-14171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 41,214.24 Da | 39.45 | 77.12 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 309 | 357 | 6.1E-10 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 47 | 258 | 5.23E-23 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 278 | 359 | 3.15E-15 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 46 | 267 | 1.6E-9 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 302 | 361 | 1.8E-14 | - |
| SMART | SM00326 | SH3_2 | 305 | 360 | 6.6E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 302 | 361 | 18.706751 | IPR001452 |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 186 | 213 | - | - |
| Coils | Coil | Coil | 149 | 169 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_020220135.1 | SH3 domain-containing protein 2 [Cajanus cajan] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LXP6 | Clathrin binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology