Basic Information
Locus ID:
nbisL1-mrna-14160
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6711061 | 6713634 | + | nbisL1-mrna-14160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 36,189.59 Da | 55.06 | 63.41 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 5.4E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 7.0E-35 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 1.9E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 323 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_034927692.1 | ubiquitin fusion degradation protein 1 homolog isoform X2 [Populus alba] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2LDP4 | Ubiquitin fusion degradation protein 1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology