Basic Information
Locus ID:
nbisL1-mrna-14155
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 16721169 | 16723784 | + | nbisL1-mrna-14155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 39,723.79 Da | 49.60 | 83.47 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 304 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 213 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 57 | 312 | 6.0E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 353 | 2.6E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 71 | 112 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 172 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 213 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 304 | 1.1E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 307 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 307 | 9.045603 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_024450049.1 | WD repeat-containing protein LWD1 [Populus trichocarpa] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | B9GTC9 | WD_REPEATS_REGION domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G214700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology