Basic Information
Locus ID:
nbisL1-mrna-14135
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001346F_pilon | 2711593 | 2715964 | + | nbisL1-mrna-14135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 40,455.81 Da | 59.62 | 75.39 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 96 | 222 | 3.9E-35 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 89 | 213 | 4.9E-41 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 325 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021687710.1 | - | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P2LDN7 | Ubiquitin fusion degradation protein 1 homolog isoform X2 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology