Basic Information
Locus ID:
nbisL1-mrna-14125
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6360128 | 6362876 | + | nbisL1-mrna-14125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 47,065.93 Da | 42.50 | 77.90 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 343 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 399 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 299 | 3.4E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 23 | 96 | 6.5E-22 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 126 | 403 | 1.53E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 419 | 1.8E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 256 | 9.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 207 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 299 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 343 | 3.0E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 209 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 265 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 345 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 367 | 401 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 209 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 345 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 301 | 9.505904 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 330 | 344 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 194 | 208 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 3.4E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_021609483.1 | WD-40 repeat-containing protein MSI2 [Manihot esculenta] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2J0N7 | WD-40 repeat-containing protein MSI2-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology