halophFGD

Basic Information

Locus ID: nbisL1-mrna-14101

Species & Taxonomic ID: Rhizophora apiculata & 106626

Genome Assembly: GCA_037832385.1

Description: Belongs to the FPP GGPP synthase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	6201217	6202574	+	nbisL1-mrna-14101

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.97	36,583.47 Da	41.55	88.80	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00685	Trans_IPPS_HT	67	327	3.98241E-57	IPR000092
Pfam	PF00348	Polyprenyl synthetase	68	266	7.5E-29	IPR000092
SUPERFAMILY	SSF48576	Terpenoid synthases	44	307	6.17E-56	IPR008949
Gene3D	G3DSA:1.10.600.10	Farnesyl Diphosphate Synthase	40	333	7.7E-81	IPR008949
ProSitePatterns	PS00723	Polyprenyl synthases signature 1.	120	136	-	IPR033749
SFLD	SFLDS00005	Isoprenoid Synthase Type I	71	309	3.3E-42	-

Gene Ontology

Biological Process:

GO:0008299 (isoprenoid biosynthetic process)

KEGG Pathway

KO Term:

K13789 (geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29])

Pathway:

ko00900 (Terpenoid backbone biosynthesis) map00900 (Terpenoid backbone biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00364 (C10-C20 isoprenoid biosynthesis, bacteria) M00366 (C10-C20 isoprenoid biosynthesis, plants)

Reaction:

R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate) R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate) R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G38460.1	geranylgeranyl reductase.
RefSeq	XP_038692193.1	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Tripterygium wilfordii]
Swiss-Prot	Q39108	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2
TrEMBL	A0A2P2J6D8	Geranylgeranyl pyrophosphate synthase OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg11914, jg19549, jg19553, jg20025, jg22837, jg26122, jg853 ... jg32446, jg39790, jg40930
Aizoaceae	Mesembryanthemum crystallinum	1	gene_24215
Amaranthaceae	Atriplex hortensis	4	Ah009610, Ah026594, Ah026595, Ah026596
Amaranthaceae	Beta vulgaris	2	BVRB_6g137830, BVRB_9g213360
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12291, Sbi_jg14763, Sbi_jg30193, Sbi_jg43625 ... Sbi_jg47274, Sbi_jg55543
Amaranthaceae	Salicornia europaea	3	Seu_jg18286, Seu_jg21542, Seu_jg26099
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013447, GOSA_00018841
Amaranthaceae	Suaeda glauca	5	Sgl34717, Sgl34720, Sgl40121, Sgl55520, Sgl60739
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003101, gene:ENSEOMG00000019252 ... gene:ENSEOMG00000028682, gene:ENSEOMG00000039116, gene:ENSEOMG00000052546
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0018070, CQ.Regalona.r1.6AG0018090 ... CQ.Regalona.r1.6BG0019150, CQ.Regalona.r1.6BG0019160, CQ.Regalona.r1.7BG0002390, CQ.Regalona.r1.9AG0022280
Anacardiaceae	Pistacia vera	4	pistato.v30090160, pistato.v30107340, pistato.v30151070 ... pistato.v30277590
Apiaceae	Apium graveolens	6	Ag3G00180, Ag4G00505, Ag6G00171, Ag6G02392, AgUnG00220 ... AgUnG00444
Arecaceae	Cocos nucifera	8	COCNU_01G014910, COCNU_03G010250, COCNU_10G007410 ... COCNU_10G009310, COCNU_13G007380, COCNU_14G010140, contig69249246G000010, scaffold001111G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103698354, gene-LOC103704346, gene-LOC103723798 ... gene-LOC120107786
Asparagaceae	Asparagus officinalis	1	AsparagusV1_08.1190.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G03931, Ftri13G24597, Ftri2G09115, Ftri4G14322
Brassicaceae	Arabidopsis thaliana	12	AT1G49530.1, AT2G18620.1, AT2G18640.1, AT2G23800.1 ... AT3G14510.1, AT3G14530.1, AT3G14550.1, AT3G20160.1, AT3G29430.1, AT3G32040.1, AT4G36810.1, AT4G38460.1
Brassicaceae	Eutrema salsugineum	9	Thhalv10000201m.g.v1.0, Thhalv10021022m.g.v1.0 ... Thhalv10022044m.g.v1.0, Thhalv10022207m.g.v1.0, Thhalv10022318m.g.v1.0, Thhalv10022745m.g.v1.0, Thhalv10022750m.g.v1.0, Thhalv10025481m.g.v1.0, Thhalv10025662m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g36400.v2.2, Sp3g12820.v2.2, Sp3g18170.v2.2 ... Sp3g18180.v2.2, Sp3g18190.v2.2, Sp3g32110.v2.2, Sp4g02740.v2.2, Sp7g34470.v2.2, Sp7g37320.v2.2
Brassicaceae	Brassica nigra	14	BniB01g019850.2N, BniB01g043750.2N, BniB01g050520.2N ... BniB02g021140.2N, BniB03g014000.2N, BniB03g067420.2N, BniB04g025490.2N, BniB05g000870.2N, BniB05g002010.2N, BniB07g031130.2N, BniB07g031140.2N, BniB07g031180.2N, BniB07g031190.2N, BniB07g050710.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq05G0729, Ceq07G1778, Ceq08G0350, Ceq08G0642
Casuarinaceae	Casuarina glauca	4	Cgl05G0738, Cgl07G1925, Cgl08G0305, Cgl08G0614
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g07210, gene.Cymno09g06790, gene.Cymno09g06830
Dunaliellaceae	Dunaliella salina	1	Dusal.0152s00015.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g33690, gene.Thate02g04310, gene.Thate02g25930 ... gene.Thate02g37860, gene.Thate04g06540, gene.Thate05g11580, gene.Thate06g19700
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.2274, evm.TU.LG02.593, evm.TU.LG02.594 ... evm.TU.LG02.595, evm.TU.LG08.361
Plantaginaceae	Plantago ovata	8	Pov_00001727, Pov_00013984, Pov_00021122, Pov_00021955 ... Pov_00022078, Pov_00026761, Pov_00032856, Pov_00041531
Plumbaginaceae	Limonium bicolor	2	Lb4G21996, Lb4G21997
Poaceae	Echinochloa crus-galli	15	AH02.1033, AH03.3500, AH05.3151, AH07.2938, BH02.1088 ... BH03.3711, BH05.3210, BH07.2746, CH02.1210, CH02.2139, CH03.3917, CH05.3260, CH07.2835, CH09.2057, CH09.739
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0005750, gene-QOZ80_2AG0140300 ... gene-QOZ80_2BG0195970, gene-QOZ80_7AG0574540, gene-QOZ80_7BG0605940, gene-QOZ80_8AG0625760, gene-QOZ80_8BG0655160
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0131350.1 ... HORVU.MOREX.r3.5HG0534860.1.CDS1, HORVU.MOREX.r3.5HG0534870.1.CDS1, HORVU.MOREX.r3.6HG0555370.1.CDS1, HORVU.MOREX.r3.6HG0602640.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_010636, gene-QYE76_010641, gene-QYE76_010642 ... gene-QYE76_016961, gene-QYE76_016962, gene-QYE76_024245, gene-QYE76_029236, gene-QYE76_040051, gene-QYE76_040052, gene-QYE76_055474, gene-QYE76_067302
Poaceae	Oryza coarctata	6	Oco01G006620, Oco02G006850, Oco03G017690, Oco04G018470 ... Oco13G010990, Oco14G011740
Poaceae	Oryza sativa	4	LOC_Os01g14630.1, LOC_Os02g44780.1, LOC_Os05g14580.1 ... LOC_Os07g39270.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G327900, gene-BS78_03G100700 ... gene-BS78_03G102600, gene-BS78_04G225600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304553, Pt_Chr0304622
Poaceae	Sporobolus alterniflorus	9	Chr02G025830, Chr05G003570, Chr06G005460, Chr0G008820 ... Chr15G007070, Chr19G003490, Chr24G011120, Chr27G013740, Chr28G010320
Poaceae	Thinopyrum elongatum	5	Tel2E01G369600, Tel6E01G226800, Tel6E01G228400 ... Tel6E01G230400, Tel6E01G471300
Poaceae	Triticum dicoccoides	10	gene_TRIDC1BG001990, gene_TRIDC1BG063770 ... gene_TRIDC2AG024000, gene_TRIDC2BG029210, gene_TRIDC6AG013010, gene_TRIDC6AG013220, gene_TRIDC6AG038930, gene_TRIDC6BG018230, gene_TRIDC6BG018550, gene_TRIDC6BG045750
Poaceae	Triticum aestivum	13	TraesCS2A02G187900.1, TraesCS2B02G219400.1 ... TraesCS2D02G199700.1, TraesCS6A02G100700.1.cds1, TraesCS6A02G102000.1, TraesCS6A02G252700.1.cds1, TraesCS6B02G128800.1.cds1, TraesCS6B02G130300.1, TraesCS6B02G272800.1.cds1, TraesCS6D02G081800.1.cds1, TraesCS6D02G090500.1, TraesCS6D02G234200.1.cds1, TraesCSU02G150900.1
Poaceae	Zea mays	5	Zm00001eb107690_P001, Zm00001eb186980_P001 ... Zm00001eb250080_P001, Zm00001eb325560_P001, Zm00001eb333900_P001
Poaceae	Zoysia japonica	5	nbis-gene-17856, nbis-gene-22331, nbis-gene-57575 ... nbis-gene-587, nbis-gene-7241
Poaceae	Zoysia macrostachya	5	Zma_g16841, Zma_g27930, Zma_g5428, Zma_g6719, Zma_g9770
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.1336, evm.TU.LG02.1778, evm.TU.LG04.1427 ... evm.TU.LG05.214, evm.TU.LG09.156, evm.TU.LG25.1096, evm.TU.LG25.241
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g17240, gene.Posoc03g26110, gene.Posoc04g07830
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.55, evm.TU.Scaffold_3_RagTag.275 ... evm.TU.Scaffold_6_RagTag.1290
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-16282, nbisL1-mrna-350, nbisL1-mrna-5150 ... nbisL1-mrna-519
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10975, nbisL1-mrna-19631, nbisL1-mrna-4946
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1131, nbisL1-mrna-6010, nbisL1-mrna-9318
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000011l.318, add.evm.TU.utg000019l.450 ... evm.TU.utg000009l.1204
Rhizophoraceae	Kandelia obovata	3	Maker00004845, Maker00007243, Maker00012587
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14101, nbisL1-mrna-19361, nbisL1-mrna-22195
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2301, nbisL1-mrna-24114, nbisL1-mrna-3943
Salicaceae	Populus euphratica	8	populus_peu08658, populus_peu09624, populus_peu14250 ... populus_peu14258, populus_peu23522, populus_peu24906, populus_peu24907, populus_peu36694
Solanaceae	Lycium barbarum	5	gene-LOC132613998, gene-LOC132621659, gene-LOC132621662 ... gene-LOC132627971, gene-LOC132629922
Solanaceae	Solanum chilense	6	SOLCI000085500, SOLCI000543000, SOLCI002174100 ... SOLCI002174200, SOLCI002174300, SOLCI006501900
Solanaceae	Solanum pennellii	6	gene-LOC107004865, gene-LOC107010484, gene-LOC107011431 ... gene-LOC107011432, gene-LOC107015812, gene-LOC107031140
Tamaricaceae	Reaumuria soongarica	4	STRG.11741_chr02_+, STRG.8814_chr03_-, gene_1642, gene_1643
Tamaricaceae	Tamarix chinensis	3	TC04G2081, TC10G0184, TC11G0546
Zosteraceae	Zostera marina	2	Zosma01g04550.v3.1, Zosma03g02500.v3.1