Basic Information
Locus ID:
nbisL1-mrna-14089
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6139243 | 6140764 | + | nbisL1-mrna-14089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 35,237.04 Da | 46.20 | 63.55 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 85 | 315 | 5.4405E-120 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 27 | 65 | 6.09915E-18 | - |
| Pfam | PF00187 | Chitin recognition protein | 28 | 65 | 6.1E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 84 | 315 | 4.7E-135 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 81 | 322 | 1.52E-112 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 28 | 67 | 1.7E-11 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 167 | 224 | 1.8E-123 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 26 | 68 | 6.7E-16 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 89 | 321 | 1.8E-123 | - |
| SMART | SM00270 | ChitinBD_3 | 28 | 65 | 5.8E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 322 | 9.0E-130 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 26 | 67 | 11.12948 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 38 | 57 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 102 | 124 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 228 | 238 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 51 | 58 | 2.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 36 | 44 | 2.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 44 | 51 | 2.9E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_011046301.1 | PREDICTED: endochitinase 2-like [Populus euphratica] | 0 |
| Q949H3 | Inactive chitinase-like protein 1 OS=Hevea brasiliensis OX=3981 GN=CHI-L1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LEU5 | Uncharacterized protein MANES_11G106100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology