Basic Information
Locus ID:
nbisL1-mrna-14039
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Fizzy-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 15330613 | 15335852 | - | nbisL1-mrna-14039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 52,491.50 Da | 42.76 | 75.26 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 182 | 458 | 4.56711E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 328 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 373 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 458 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 158 | 459 | 9.77E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 126 | 460 | 4.8E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 419 | 458 | 3.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 202 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 245 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 416 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 373 | 4.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 426 | 459 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 426 | 459 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 331 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 13.983944 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 445 | 459 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 315 | 329 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_021653739.1 | protein FIZZY-RELATED 3 [Hevea brasiliensis] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A067L903 | Protein FIZZY-RELATED 3 OS=Jatropha curcas OX=180498 GN=JCGZ_01436 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology