Basic Information
Locus ID:
nbisL1-mrna-14029
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001346F_pilon | 2104452 | 2106517 | - | nbisL1-mrna-14029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 45,046.41 Da | 43.88 | 106.72 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 18 | 59 | 3.76977E-25 | - |
| Pfam | PF04564 | U-box domain | 14 | 85 | 9.6E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 393 | 2.51E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 89 | 2.94E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 89 | 410 | 2.7E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 87 | 3.7E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 17 | 80 | 1.5E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 13 | 87 | 41.576557 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_034927957.1 | - | 0 |
| Q9FXA4 | U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2IJB7 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1091, jg26256, jg28665, jg30249 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21774 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009908 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11160, Sbi_jg46133 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20476 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005473 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55730, Sgl60944 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000017554 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004910, CQ.Regalona.r1.9AG0019520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30213590 |
| Apiaceae | Apium graveolens | 1 | Ag9G00162 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G010610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703189 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G08715, Ftri3G01842, Ftri4G07620 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G49780.1, AT3G19380.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011515m.g.v1.0, Thhalv10022190m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36680.v2.2, Sp3g17440.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g044870.2N, BniB07g006030.2N, BniB07g051300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2127 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.491 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012321 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.2146, CH07.2008 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0133440, gene-QOZ80_2BG0189000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0603650.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022806, gene-QYE76_022865 |
| Poaceae | Oryza coarctata | 3 | Oco03G012130, Oco03G024290, Oco04G014180 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g34410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G157800 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G010190, Chr07G017270, Chr09G014690, Chr13G010700 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G478200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG039540, gene_TRIDC6BG046490 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G256700.1.cds1, TraesCS6B02G268300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb181840_P001, Zm00001eb243330_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20766, nbis-gene-38521, nbis-gene-47963 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13669, Zma_g25714, Zma_g30158, Zma_g5112 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1530, evm.TU.LG08.873, evm.TU.LG09.333 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc04g00190, gene.Posoc04g08880, gene.Posoc05g20400 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2089, evm.TU.Scaffold_2_RagTag.328 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4867, nbisL1-mrna-5899 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19099, nbisL1-mrna-2201 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3448, nbisL1-mrna-9810 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.275, add.evm.TU.utg000016l.87 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005578, Maker00016563 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17716, nbisL1-mrna-18628 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14029, nbisL1-mrna-6061 |
| Salicaceae | Populus euphratica | 2 | populus_peu09016, populus_peu36326 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599030 |
| Solanaceae | Solanum chilense | 1 | SOLCI005038000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010036 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11603_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0301 |
| Zosteraceae | Zostera marina | 1 | Zosma04g14780.v3.1 |