Basic Information
Locus ID:
nbisL1-mrna-13984
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000061F_pilon | 2434422 | 2435602 | - | nbisL1-mrna-13984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 15,642.32 Da | 34.29 | 78.63 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 16 | 77 | 8.08295E-10 | IPR002048 |
| CDD | cd00051 | EFh | 61 | 109 | 7.13042E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 16 | 77 | 1.2E-13 | IPR002048 |
| Pfam | PF13405 | EF-hand domain | 92 | 109 | 4.3E-5 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 6 | 109 | 3.92E-29 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 7 | 111 | 1.5E-29 | - |
| SMART | SM00054 | efh_1 | 52 | 80 | 0.0074 | IPR002048 |
| SMART | SM00054 | efh_1 | 16 | 44 | 0.024 | IPR002048 |
| SMART | SM00054 | efh_1 | 92 | 115 | 11.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 12 | 47 | 13.732334 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 48 | 83 | 10.887003 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 109 | 9.57592 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 61 | 73 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_012070221.1 | probable calcium-binding protein CML18 [Jatropha curcas] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067L4T3 | Calcium-binding protein CML18 OS=Jatropha curcas OX=180498 GN=JCGZ_02535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology