Basic Information
Locus ID:
nbisL1-mrna-13934
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr06 | 13957674 | 13960564 | + | nbisL1-mrna-13934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.15 | 42,505.72 Da | 27.11 | 85.08 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 45 | 380 | 5.25344E-141 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 52 | 374 | 2.9E-79 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 48 | 389 | 2.33E-69 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 280 | 345 | 1.83E-10 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 279 | 345 | 2.4E-111 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 61 | 376 | 2.4E-111 | - |
| SMART | SM00636 | 2g34 | 47 | 374 | 1.5E-95 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 47 | 390 | 70.946381 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 154 | 162 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_034907746.1 | class V chitinase-like [Populus alba] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2YJ21 | GH18 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_012284 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology